other:inspect3d:documentation:pages:pca_graphs
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other:inspect3d:documentation:pages:pca_graphs [2024/07/17 15:44] – created sgranger | other:inspect3d:documentation:pages:pca_graphs [2024/12/20 15:25] (current) – wikisysop | ||
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Inspect3D has a window with six displays for exploring the results of [[Sift: | Inspect3D has a window with six displays for exploring the results of [[Sift: | ||
- | Note that these windows will only be populated after PCA is run on the loaded data through the {{: | + | Note that these windows will only be populated after PCA is run on the loaded data through the {{: |
- | ==== Displays ==== | + | ===== Displays |
The PCA Graphs window has six tabbed displays, each of which provides a unique view of your PCA results. | The PCA Graphs window has six tabbed displays, each of which provides a unique view of your PCA results. | ||
- | === Variance Explained === | + | ==== Variance Explained |
{{: | {{: | ||
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Hovering over a bar causes the percentage explained by that specific PC to be displayed on top of the bar. Hovering over the points on the cumulative amount line causes the PC number, the variance explained by that PC and cumulative variance explained to appear beside the point. | Hovering over a bar causes the percentage explained by that specific PC to be displayed on top of the bar. Hovering over the points on the cumulative amount line causes the PC number, the variance explained by that PC and cumulative variance explained to appear beside the point. | ||
- | === Loading Vector === | + | ==== Loading Vector |
{{: | {{: | ||
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The user can choose to flip the graph along the y-axis. | The user can choose to flip the graph along the y-axis. | ||
- | === Workspace Scores === | + | ==== Workspace Scores |
{{: | {{: | ||
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The Workspace Scores subwindow (formerly the Subject Scores subwindow) produces a scatter plot of subject scores for two selected PCs. The subject score for a selected PC is the distance between the subject' | The Workspace Scores subwindow (formerly the Subject Scores subwindow) produces a scatter plot of subject scores for two selected PCs. The subject score for a selected PC is the distance between the subject' | ||
- | Clicking on a subject' | + | Clicking on a subject' |
The user can choose to plot the subjects' | The user can choose to plot the subjects' | ||
- | === Group Scores === | + | ==== Group Scores |
{{: | {{: | ||
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Hovering over an individual scatter point shows the underlying details for that point. | Hovering over an individual scatter point shows the underlying details for that point. | ||
- | === Extreme Plot === | + | ==== Extreme Plot ==== |
{{: | {{: | ||
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The curves in the Extreme Plot display show the shape and magnitudes of the selected PC. Within the Extreme Plot display, users can select among many different plot types. | The curves in the Extreme Plot display show the shape and magnitudes of the selected PC. Within the Extreme Plot display, users can select among many different plot types. | ||
- | //Mean +/- 1 SD Reconstruction:// | + | * **//Mean +/- 1 SD Reconstruction:// |
- | //Mean +/- 5th and 95th percentile:// | + | * **//Mean +/- 5th and 95th percentile:// |
- | //Mean +/- 5th and 95th percentile raw data:// Shows the mean as well as the 5th and 95th percentiles of the raw data for the PC. | + | * **//Mean +/- 5th and 95th percentile raw data://** Shows the mean as well as the 5th and 95th percentiles of the raw data for the PC. |
- | //Mean +/- custom percent reconstruction:// | + | * **//Mean +/- custom percent reconstruction:// |
- | //Mean +/- Slider:// This option animates each PC from -2 standard deviations to +2 standard deviations while showing the mean curve. The animation starts when the user clicks Play in the bottom right corner. | + | * **//Mean +/- Slider://** This option animates each PC from -2 standard deviations to +2 standard deviations while showing the mean curve. |
+ | |||
+ | The animation starts when the user clicks Play in the bottom right corner. | ||
Some of the plot types allow the user to input additional specifications. In these cases, the **Refresh Plot** allows the user to apply their settings to the plot and have it update. | Some of the plot types allow the user to input additional specifications. In these cases, the **Refresh Plot** allows the user to apply their settings to the plot and have it update. | ||
- | === PC Reconstruction === | + | ==== PC Reconstruction |
{{: | {{: | ||
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- | ==== Manipulating Graphs ==== | + | ===== Manipulating Graphs |
- | {{: | + | {{: |
The graphs for each of the PC displays can be customized to the user's specifications. Right-clicking on any of the graphs will bring up a context menu that allows a number of options to be set. Not all options are available for all displays. | The graphs for each of the PC displays can be customized to the user's specifications. Right-clicking on any of the graphs will bring up a context menu that allows a number of options to be set. Not all options are available for all displays. | ||
+ | \\ | ||
+ | \\ | ||
**Export Graph** | **Export Graph** | ||
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- | === Colors === | + | ==== Colors |
**Background Color** | **Background Color** | ||
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This option allows the user to change the color of the background. When it is selected the Select Color dialog box, presented on the right will appear. | This option allows the user to change the color of the background. When it is selected the Select Color dialog box, presented on the right will appear. | ||
- | **Label Color** | + | |
- | This option allows the user to change the color of the labels | + | * **//Axes Color//**:This option allows the user to change the color of the axis on the graph. When it is selected the Select Color dialog box, presented on the right, will appear. |
- | **Axes Color** | ||
- | This option allows the user to change the color of the axis on the graph. When it is selected the Select Color dialog box, presented on the right, will appear. | + | ==== Axes ==== |
+ | {{: | ||
- | === Axes === | + | Depending on the graph being manipulated, |
- | **Axis** | + | |
- | Depending on the graph being manipulated, there will be differences in the sub menu. The sub-menu items may be: | + | * **//X-Axis Edit ...//**: This option opens the X-Axis dialogue box which allows the user to manually entered an Axis Title, an Axis Minimum, and an Axis Maximum. The Cancel button |
- | //None// Selecting this option will remove | + | * **//Y-Axis Edit ...//**: |
- | {{:I3DGraphsXAxisDialogue.png}} | + | |
+ | * **// | ||
+ | |||
+ | * **//Custom ...//**: This option allows the user to set the Font, Font style, Size, and Effects of the labels. | ||
- | //X-Axis Edit ...// This option opens the X-Axis dialogue box which allows the user to manually entered an Axis Title, an Axis Minimum, and an Axis Maximum. The Cancel button will close the dialogue box without making any changes. The Save button will apply the changes to the graph. | ||
- | //Y-Axis Edit ...//This option opens the Y-Axis dialogue box which allows the user to manually entered an Axis Title, an Axis Minimum, and an Axis Maximum. The Cancel button will close the dialogue box without making any changes. The Save button will apply the changes to the graph. | ||
- | //Automatic Re-scale// This option brings the graph back to its automatic scaling in the event that the user has zoomed in or out. The same effect can be accomplished by holding down control and shift and left clicking on the graph. | ||
- | //Custom ...// This option allows the user to set the Font, Font style, Size, and Effects of the labels. | ||
**Selection Label** This option allows the user to manipulate the x and y-axis. | **Selection Label** This option allows the user to manipulate the x and y-axis. | ||
- | //None// This option removes the labels from the x and y-axis. | + | * **//None//**: This option removes the labels from the x and y-axis. |
- | // | + | |
+ | *** // | ||
+ | |||
+ | ==== Lines ==== | ||
+ | |||
+ | * **//Line Size//**: This option allows the user to control the size of the lines on the graph. The options range from 1 to 6. | ||
- | === Lines === | + | * **//Line Color//**: This option controls the color of the line graphed. When it is selected the Select Color dialog box, presented above, will appear. |
- | **Line | + | |
- | **Line | + | |
- | **Line Type** This option controls the type of line used. The options are None, Dotted and Line. | + | |
- | **Selected | + | |
- | **Original | + | |
- | **Reconstruction | + | |
- | **Mean Line Color** This option controls the color of the line for the mean points of the data for the PC being graphed. When it is selected the Select Color dialogue box, presented above, will appear. | + | |
- | **Low Line Color** This option controls the color of the line for the low points of the data for the PC being graphed. | + | |
- | **High Line Color** This option controls the color of the line for the high points of the data for the PC being graphed. | + | |
- | **Mean Line Type** This option controls the type of line used for the mean points of the data for the PC being graphed. The options are None, Dotted and Line. | + | |
- | **Low Line Type** This option controls the type of the line used for the low points of the data for the PC being graphed. The options are None, Dotted and Line. | + | ==== Scatter Plots ==== |
- | **High Line Type** This option | + | |
- | === Scatter | + | * **// |
- | **Scatter | + | |
- | **Selected Scatter | + | |
- | **Scatter Style** This option allows the user to control the shape of points for all scatter plots. The options are None, Dot, Cross, Circle, Disc, Square, Diamond, and Star. | + | |
- | **Selected Scatter Style** This option determines the point shape of the selected scatter plot only. | + | |
- | **Original Scatter Style** This option controls the style of the scatter plots used for the original data points. The options are None, Dot, Cross, Circle, Disk, Square, Diamond, and Star. | + | |
- | **Reconstruction Scatter Style** This option controls the style of the scatter plots used when using PCs to reconstruct the data. The options are None, Dot, Cross, Circle, Disk, Square, Diamond, and Star. | + | |
- | **Mean Scatter Style** This option controls the shape of the scatter plot for the mean points of the data for the PC being graphed. | + | |
- | **Low Scatter Style** This option controls the shape of the scatter plot for the low points of the data for the PC being graphed. | + | |
- | **High Scatter Style** This option controls the shape of the scatter plot for the high points of the data for the PC being graphed. | + | |
- | === Bar Charts === | + | ==== Bar Charts |
- | **Bar Color** This option allows the user to change the color of the percentage bar. When it is selected the Select Color dialog box, presented above, will appear. | + | |
- | **Bar Size** This option allows the user to change the width of the percentage bar. The options range from size 0.1 to 0.9. | + | |
- | === Error Bars === | + | ==== Error Bars ==== |
- | **Error Bar Color** This option allows the user to change the color of the error bar. When it is selected the Select Color dialog box, presented above, will appear. | + | |
- | **Error Bar Size** This option allows the user to change the size of the error bar from sizes 1 to 5. | + | |
- | === Miscellaneous === | + | ==== Miscellaneous |
- | **Apply style to all** This option allows the user to apply whatever style changes have been made to all of the graphs at once. | + | |
other/inspect3d/documentation/pages/pca_graphs.1721231072.txt.gz · Last modified: 2024/07/17 15:44 by sgranger