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--- sift:build_cmz:building_cmzs [2024/06/14 17:20] – created sgranger
+++ sift:build_cmz:building_cmzs [2024/07/17 15:44] (current) – created sgranger
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-|**Language:**|** [[index.php?title=MediaWiki&action=edit&redlink=1|English]]**  • [[index.php?title=MediaWiki/fr&action=edit&redlink=1|français]] • [[index.php?title=MediaWiki/it&action=edit&redlink=1|italiano]] • [[index.php?title=MediaWiki/pt&action=edit&redlink=1|português]] • [[index.php?title=MediaWiki/es&action=edit&redlink=1|español]] ****|
+====== Building CMZs ======
-|===== Contents =====\\ \\ \\ \\ * [[#Build_CMZ_Dialog_-_Generic_Builder|1 Build CMZ Dialog - Generic Builder]]\\   * [[#Minimum_Inputs|1.1 Minimum Inputs]]\\   * [[#Optional_Inputs|1.2 Optional Inputs]]\\   * [[#Troubleshooting|1.3 Troubleshooting]]\\     * [[#Warning_Messages|1.3.1 Warning Messages]]\\     * [[#Error_Messages|1.3.2 Error Messages]]\\ * [[#Build_CMZ_Dialog_-_Theia_Builder|2 Build CMZ Dialog - Theia Builder]]|
 To load data in Sift you will need to have created CMZ files. CMZ files are compressed Visual3D workspaces that contain both pure data and calculated values. If you are familiar with Visual3D, you may already know how to create CMZ files in the Visual3D interface. The Build CMZ feature in Sift is designed to automate the generation of CMZ files so that they do not have to be created one by one.
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 Examples of using the Build CMZ function can be found under the [[Sift:Tutorials:OpenBiomechanics_Project:Build_CMZ_Files|Build CMZ Tutorial]].
-====== Build CMZ Dialog - Generic Builder ======
+===== Build CMZ Dialog - Generic Builder =====
-[[File:GenericBuilder.png|{{/images/thumb/0/04/GenericBuilder.png/500px-GenericBuilder.png?500x671}}]]
+{{:GenericBuilder.png}}
 Clicking the "Load C3Ds" button on the Load page will bring up the GUI shown to the right, including the Generic CMZ Builder and the Theia Builder. This section focuses on the generic CMZ builder. There are **four** types of inputs that can be used to build a CMZ for the generic builder:
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 After all files have been uploaded, click the **"Create CMZs"** button. This button combines all the C3D files in the CMZ Directory folder into one CMZ file that Sift can then load as a library. It includes the metadata, applies the model to all the C3D files, and runs the scripts in order. When this button is pressed, the Metadata window will open (if a metadata file has been provided).
-===== Minimum Inputs =====
+==== Minimum Inputs ====
 The only required files to build a CMZ are:
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 All other inputs are optional.
-===== Optional Inputs =====
+==== Optional Inputs ====
 **Metadata File:** Metadata files contain supplementary information about the data you are loading (subject age, weight, walking speed, etc.) Metadata files can be used to refine Sift queries after the library has been loaded.
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 **Scripts:** An ASCII file containing a series of Visual3D pipeline commands, with the extension .v3s. You would load scripts if you wanted to run a Visual3D pipeline on the created CMZ workspace.
-===== Troubleshooting =====
+==== Troubleshooting ====
 This section contains a list of the error messages you may encounter while using the Build CMZ and metadata functions. The Build CMZ dialog and metadata windows expect reasonably specific input and may not execute if files or expected inputs are missing.
-==== Warning Messages ====
+=== Warning Messages ===
 **No C3D files without CMZs found. Skipping build.**
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   * Did you forget to Browse to the location of your MDH file? If you do not intend to include a model file, please uncheck the box next to the MDH file.
-==== Error Messages ====
+=== Error Messages ===
 **No information passed. Cannot build CMZs.**
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   * This is an uncommon error. It means that no files at all were returned by the Build CMZ dialog.
-====== Build CMZ Dialog - Theia Builder ======
+===== Build CMZ Dialog - Theia Builder =====
-[[File:Sift_TheiaBuilder.png|{{/images/thumb/1/18/Sift_TheiaBuilder.png/800px-Sift_TheiaBuilder.png?800x908}}]]
+{{:Sift_TheiaBuilder.png}}
 This section focuses on the Theia Builder, which builds CMZ files from Theia3D outputs. This dialog closely matches the dialog for building Theia3D files in Visual3D, "Manage_Theia3D_Merge". This is also accessed from the "Load C3Ds" button on the Load page.
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 **Automatic Save is on by default:** you just need to select how to save from the given options.
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