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--- visual3d:documentation:reports:normative_data_from_cmo_library [2024/07/17 15:23] – sgranger
+++ visual3d:documentation:reports:normative_data_from_cmo_library [2024/11/04 15:47] (current) – [Step 3: Create the normal database] wikisysop
@@ Line 14: / Line 14: @@
 The downloaded file contains:
-. A sample CMO library containing two CMO files (Sub01_Walk.cmo & Sub02_Walk.cmo) (These CMO files should work the same as CMZ files)
+  - A sample CMO library containing two CMO files (Sub01_Walk.cmo & Sub02_Walk.cmo) (These CMO files should work the same as CMZ files)
-. A sample report template (SampleReport.rgt)
+  - A sample report template (SampleReport.rgt)
-. A sample script to create a normal database (SampleScript.v3s)
+  - A sample script to create a normal database (SampleScript.v3s)
-. A sample normal database (NormalDatabase.vnd)
+  - A sample normal database (NormalDatabase.vnd)
 **Note:** Visual3D now uses the updated and improved [[Visual3D:Documentation:Definitions:File_Formats:CMZ_Format_|CMZ format]], which will work identically for the purposes of this example.
@@ Line 31: / Line 32: @@
 **NOTE** The CMZ files can be in subfolders as well.\\
-\\
-\\
-\\
-\\
 {{:CMO_Lib_CMO_Path.png}}
@@ Line 42: / Line 38: @@
 If using the sample files, point to the CMO_Lib folder.\\
-\\
-\\
-\\
 {{:CMO_Lib_Catalog.png}}
@@ Line 61: / Line 53: @@
 **Note:** If you are using a premade pipeline any variables you wish to save in the .vnd file needs to be saved using the [[Visual3D:Documentation:Pipeline:Signal_Commands:Global_Normalized_Signal_Mean|Global_Normalized_Signal_Mean]].
-**Global_Normalized_Signal_Mean**
+<code>
-/**SIGNAL_TYPES**=LINK_MODEL_BASED+LINK_MODEL_BASED
+Global_Normalized_Signal_Mean
-/**SIGNAL_NAMES**=RKNEE_ANGLE+LKNEE_ANGLE
+/SIGNAL_TYPES=LINK_MODEL_BASED+LINK_MODEL_BASED
-/**SIGNAL_FOLDER**=ORIGINAL+ORIGINAL
+/SIGNAL_NAMES=RKNEE_ANGLE+LKNEE_ANGLE
-**/SIGNAL_COMPONENTS**=X+X
+/SIGNAL_FOLDER=ORIGINAL+ORIGINAL
-**/START_LABEL**=
+/SIGNAL_COMPONENTS=X+X
-**/END_LABEL**=
+/START_LABEL=
-**/EVENT_SEQUENCE**= RHS+RHS++LHS+LHS
+/END_LABEL=
-**! /EXCLUDE_EVENTS**=
+/EVENT_SEQUENCE= RHS+RHS++LHS+LHS
-**/RESULT_NAME**=KNEE_FLEXION
+! /EXCLUDE_EVENTS=
-**! /RESULT_FOLDER**=ORIGINAL
+/RESULT_NAME=KNEE_FLEXION
-**/NORMALIZE_POINTS**=101
+! /RESULT_FOLDER=ORIGINAL
-**/CREATE_STANDARD_DEVIATION**=TRUE
+/NORMALIZE_POINTS=101
-**! /CALCULATE_PER_FILE**=FALSE
+/CREATE_STANDARD_DEVIATION=TRUE
-**;**
+! /CALCULATE_PER_FILE=FALSE
+;
+</code>
 === Option 2: Creating Script based off a Report Template ===
@@ Line 82: / Line 78: @@
 **1. Load a report template.** You can do this two ways:
-A. Open a CMO that has the report/graph of the values you wish to create ”normal” data for.
+A. Open a CMO that has the report/graph of the values you wish to create ”normal” data for.\\
-You can open one of the example CMO files
+You can open one of the example CMO files\\
-B. Open a report template that contains the data values you wish to create ”normal” data for.
+B. Open a report template that contains the data values you wish to create ”normal” data for.\\
-You can open the sample report template (SampleReport.rgt)
+You can open the sample report template (SampleReport.rgt)\\
-**Note:** If you are following the Gait Profile Score Tutorial the use this [[https://www.has-motion.com/download/examples/GaitProfileScore/ReportTemplate.rgt|report template]].
+**Note:** If you are following the Gait Profile Score Tutorial the use this [[https://www.has-motion.com/download/examples/GaitProfileScore/ReportTemplate.rgt|report template]].\\
 **2. Create script:**
-. Select from the main menu: **CMO Library -> Create Normal Database Script**.
+. Select from the main menu: **CMO Library -> Create Normal Database Script**.\\
-{{:NormalDB_Script_CreateNormal.png}}
+{{:NormalDB_Script_CreateNormal.png}}\\
-. In the pop up window:
+. In the pop up window:\\
-A. Specify the name of a folder to save the data (ex. PROCESSED)
+A. Specify the name of a folder to save the data (ex. PROCESSED)\\
-**NOTE:** If you are going to plot two normal databases in one CMZ file (ex. Walk and Run), you should name the different folders "WALK" and "RUN" here.
+**NOTE:** If you are going to plot two normal databases in one CMZ file (ex. Walk and Run), you should name the different folders "WALK" and "RUN" here.\\
-{{:NormalDB_Script_FolderName.png}}
+{{:NormalDB_Script_FolderName.png}}\\
-B. Specify the number of points to normalize to (ex. 101)
+B. Specify the number of points to normalize to (ex. 101)\\
-**NOTE:** Typically this would match the number of points you normalize your graphs to in the report template (Normalize 0 to 100%) so 101 points is used most often.
+**NOTE:** Typically this would match the number of points you normalize your graphs to in the report template (Normalize 0 to 100%) so 101 points is used most often.\\
-{{:NormalDB_Script_NumPoints.png}}
+{{:NormalDB_Script_NumPoints.png}}\\
-C. Create normals/means for all the graphs in the report (optionally, use only those graphs that have mean values graphed).
+C. Create normals/means for all the graphs in the report (optionally, use only those graphs that have mean values graphed).\\
-{{:NormalDB_Script_AllOrMeansOnly.png}}
+{{:NormalDB_Script_AllOrMeansOnly.png}}\\
 \\
 **3. View the created script in the Pipeline.**
-There will be one command in the pipeline for every graph item in the report (or every one with a mean graphed if that option was selected). This means if you want to average the right/left together, you will need to modify the script to do this.
+There will be one command in the pipeline for every graph item in the report (or every one with a mean graphed if that option was selected). This means if you want to average the right/left together, you will need to modify the script to do this.\\
-**Note:** Running this wizard will create the command "Global_Normalized_Signal_Mean” and fill in the parameters for you whether you have the pipeline dialog open or not. Any time you choose to create this script automatically, it will append the results to anything that is in the pipeline workshop.
+**Note:** Running this wizard will create the command "Global_Normalized_Signal_Mean” and fill in the parameters for you whether you have the pipeline dialog open or not. Any time you choose to create this script automatically, it will append the results to anything that is in the pipeline workshop.\\
-{{:Global_Normailized_Signal_Mean_New2.png}}
+{{:Global_Normailized_Signal_Mean_New2.png}}\\
 \\
 **4. Save the Pipeline script.**
@@ Line 116: / Line 113: @@
 **1. Clear out the entire Visual3D workspace**
-(File -> New, or restart Visual3D)
+(File -> New, or restart Visual3D)\\
-{{:CMO_Lib_FileNew.png}}
+{{:CMO_Lib_FileNew.png}}\\
 **2. Browse the CMO Library.**
-From the main menu, select CMO Library -> Browse.
+From the main menu, select CMO Library -> Browse.\\
-{{:CMO_Lib_BrowseLib.png}}
+{{:CMO_Lib_BrowseLib.png}}\\
 **3. Set the Active File to EACH_CMO_WORKSPACE**
-To select only specific files, create a new Tag, check the files to use, and select the tag name in the combo box.
+To select only specific files, create a new Tag, check the files to use, and select the tag name in the combo box.\\
-{{:CMO_Lib_ActiveFile.png}}
+{{:CMO_Lib_ActiveFile.png}}\\
 **4. Execute the script to create the normal database**
-To select only specific files, create a new Tag, check the files to use, and select the tag name in the combo box.
+To select only specific files, create a new Tag, check the files to use, and select the tag name in the combo box.\\
 Execute the script that was saved earlier.
 ==== Step 4: Save the normal database ====