XManager: Basics: Difference between revisions
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The Scan Data section is displayed only when the Scan Data checkbox is selected. | The Scan Data section is displayed only when the Scan Data checkbox is selected. Scan Data files are added by right-clicking on the data table and selecting the Add Scan Data button. These files can either be CT or MRI data collected for the specific session. Typically, a Scan Data item is a folder of DICOM images. In this case the specified File can be any one of the DICOM files in the folder. When the DSX applications load scan data, they will automatically load all DICOM files in the same folder that have the same series ID as the specified file. If you want to load all files in the folder regardless of series ID, check the Load Folder box to the right of the file name. The Name of the Scan Data item is for your own reference and can be changed to any text by double-clicking on the name and typing in a new one. | ||
[[Image:xManT_NewSessionScanDataFilledOut2.png]] | [[Image:xManT_NewSessionScanDataFilledOut2.png]] |
Revision as of 21:36, 9 July 2021
Language: | English • français • italiano • português • español |
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The purpose of this tutorial is to guide you in the creation of a subject file in DSX Manager.
The instructions for this tutorial are purposely designed to be general so that you can use your own data.
Subject
Create New Subject |
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In order to create a new subject you can either use the Ctrl + N shortcut or can select File in the menu bar and clicking on New Subject. This will open a standard file browser window that will allow you to choose a new file name and save the New Subject file in the location of your choosing. |
Complete New Subject Info |
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Once a new subject has been created it will appear as 0000 in the left hand field. Select the 0000 and the right hand field will be populated with the following fields:
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Sessions
Add Sessions |
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Click the arrow button to the left of the Subject ID number in the left hand field to expand the list. Left click on the Sessions Label so that the Add Sessions option appears. Click on Add Sessions. This will cause an arrow to appear to the left of the Sessions Label. Click on the arrow in order to expand the list. It will expand to show the label newsessions, which can in turn be expanded to show the labels Objects and Configurations. |
Complete Session Info | ||||||
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Once a new session has been created it will appear as newsession in the left hand field. Select the newsession and the right hand field will be populated with the following fields:
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Calibration Devices
Add Calibration Device |
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Complete Calibration Device | ||||||
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Click on the new calibration device in the tree view to display its properties in the panel on the right.
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Grid Devices
Add Grid Device |
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Complete Grid Device | ||||
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Click on the new grid device in the tree view to display its properties in the panel on the right.
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Trackable Objects
Add Trackable Objects |
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Complete Trackable Objects | ||||||||||||
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Click on the new object in the tree view to display its properties in the panel on the right.
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Configurations
Add Configurations |
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Complete Configurations | ||||||||||||||
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Trials
Add Trials |
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Complete Trials | ||||||||
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Second Configuration
Add A Second Configuration |
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Using the instructions above, create a second configuration named "Left Level Walk" and complete it with the following information: General Name - Left Level Walk Setup Name view1 - inline Name view2 - offset Calibration - General Inline - 1796.0 Offset - 1795.0 Calibration - Uniformity Name - intensity Type - Uniformity Time - 3:54 PM View Name - inline Raw File, File Path - iwhite4.cine File Format - CINE Frequency (Hz) - 150.00 View Name - offset Raw File, File Path - owhite4.cine File Format - CINE Frequency (Hz) - 150.00 Calibration - Distortion Name - grid Type - Distortion Time - 3:54 View Name - inline Raw File, File Path - igrid4.cine File Format - CINE Frequency (Hz) - 150.00 View Name - offset Raw File, File Path - ogrid4.cine File Format - CINE Frequency (Hz) - 150.00 Calibration - 3D Name - cube Type - 3D Calibration Time - 3:54 PM Mocap Parameters, C3D File Name - cube4.c3d Tracked Bodies - Checkmark next to cube View Name - inline Raw File, File Path - cube4_Cam_Inline_Cine1.cine File Format - CINE Frequency (Hz) - 150.00 View Name - offset Raw File, File Path - cube4_Cam_Offset_Cine1.cine File Format - CINE Frequency (Hz) - 150.00 Trials - LLW 2 Name - LLW 2 Type - Motion Reference Trial - LeftStand Time - 3:54 PM Mocap Parameters C3D File Name - llw2.c3d Time Offset - 0.00 Generalized Coordinates Name - FlexExt Min - -90 Max - 90 Tracked Bodies - Checkmark next to left_femur and left_tibia View Name - inline Raw File, File Path - llw2_Cam_Inline_Cine1.cine File Format - CINE Frequency (Hz) - 150.00 View Name - offset Raw File, File Path - llw2_Cam_Offset_Cine1.cine File Format - CINE Frequency (Hz) - 150.00 |
Reference Trials |
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General Name - LeftStand Type - Reference Time - 3:55 PM Mocap Parameters If the Mocap Parameters section does not update the fields automatically, navigate to another screen and back to the reference trial.
The files listed above are explained in detail in the motion capture guide. Generalized Coordinates Name - FlexExt Min - -90 Max - 90 Tracked Bodies Place a checkmark next to left_femur and left_tibia. Views Name - inline Raw File, File Path - lstand1_Cam_Inline_Cine1.cine File Format - CINE Frequency (Hz) - 150.00 Name - offset Raw File, File Path - lstand1_Cam_Offset_Cine1.cine File Format - CINE Frequency (Hz) - 150.00 |